Bmc Bioinformatics Journal
Performs Mantel-Haenszel's test for k strata of 2x2 tables.Mantel and Haenszel proposed this asymptotic test based on the chi-2 distribution. Assuming no three-way interaction (k independent strata). Ref.: DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/Input: X: data matrix...
|License: Shareware||Cost: $0.00 USD||Size: 10 KB||Download (18): Mantel-Haenszel's test Download|
Chi-square tests of homogeneity and independence.Computes the P-value for I x J - table row/col independence.Ref.: DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/Input:X: data matrix (I x J -table) of the observed frequency cells.method: 'RC': Read-Cressie power divergence...
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It is a non-parametric statistical test for discrete data used todetermine if there are nonrandom associations between the two variables.Mid-P values are a reasonable compromise between the conservativeness ofthe ordinary exact test and the uncertain adequacy of large-sample methods.Mid-P values...
|License: Shareware||Cost: $0.00 USD||Size: 10 KB||Download (20): Fisher's Exact with mid-P method Download|
AutoSOME is a new unsupervised multidimensional clustering method for identifying clusters of diverse shapes and sizes from large numerical datasets without prior knowledge of cluster number (BMC Bioinformatics, 11:117). Given the general nature of data clustering, AutoSOME has utility for a wide...
|License: Freeware||Size: 10.24 KB||Download (18): AutoSOME Download|
The package generates a feature table from a batch of LC/MS spectra in .cdf format.
BMC Bioinformatics. 11:559.
Platforms: Windows, Mac, BSD
|License: Freeware||Size: 5.17 MB||Download (27): apLCMS Download|
CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
Platforms: Windows, Mac, BSD, Linux
|License: Freeware||Size: 1.02 MB||Download (27): CNV Workshop Download|
An R package that performs forward-backward fragment assembling segmentation.
Reference: BMC Bioinformatics. 2007 May 3;8:145.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 13.46 MB||Download (27): FASeg Download|
This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. 'Novel computational methods for increasing PCR primer design effectiveness in directed sequencing'. BMC Bioinformatics 2008, 9:191.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 181.36 MB||Download (30): JCVI Primer Designer Download|
PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.
|License: Freeware||Size: 44.67 MB||Download (27): PheMaDB (Phenotype Microarray DataBase) Download|
A cumulative Mann-Kendall trend test.Calculating p-values for monotonic trend of ordinal data sequences(e.g. proteins) by a compound test based on Kendall's rank correlation.Ref.: The DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/Use: pval = cumKendallTest(Q,pop,tail)returns...
|License: Shareware||Cost: $0.00 USD||Size: 10 KB||Download (19): Cumulative Mann-Kendall trend test Download|
COMPUTEGTOM computes the generalized overlaping measure algorithm (GTOM) AuthorsJoaquin GodoT-i &IdoT-igo Martincorena University of Navarra -Dpt. of Physics and Applied Mathematics &Centre for Applied Medical Research. Pamplona (Spain). November 22nd, 2007batchComputeGTOM.m contains an...
|License: Shareware||Cost: $0.00 USD||Size: 10 KB||Download (18): GTOM - Generalized Topological Overlaping Measure Download|
ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...
|License: Freeware||Size: 21.13 MB||Download (16): ErmineJ Download|
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A database program for people with diabetes who test their blood sugar. Record, analyze, and organize glucose test results. Keep an organized computer journal or diary of important blood sugar test records. Glucose test results are always perfectly ordered by date and time. A Master Journal...
|License: Shareware||Cost: $23.95 USD||Size: 3.71 MB||Download (149): Glucose Journal and Database Download|
The All-in-one Journal is a full featured Journal that includes Full Audio Record & Playback. Now you can record your Journal entries in Audio too. Great for personalizing your entries, recording your children or grandchildren, leaving messages, reminders and more.
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Co-designed by a Mental Health Professional and an award winning windows developer, Forever Journal is multi-faceted journaling software that is secure and password protected. It also looks like a real paper journal! But, unlike a paper journal which can be found and read, this system protects...
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Alpha Journal lets anyone keep a private journal, diary or log for personal or business use, but that's not all... Entries are stored in an encrypted file with optional password protection and can contain formatted text, pictures, sounds and even other documents. Entries can be added, deleted,...
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With Effective-Journal you can create some wonderful and colorful entries. Insert pictures and emoticons to liven up your journal. We have made a variety of emoticons as well. In Journal you can format your text with the same controls as in Microsoft's WordPad. The Text is Rich Text based, which...
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