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Bmc Bioinformatics Journal software
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Bmc Bioinformatics Journal

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Added: August 28, 2013 | Visits: 308

Mantel-Haenszel's test Performs Mantel-Haenszel's test for k strata of 2x2 tables.Mantel and Haenszel proposed this asymptotic test based on the chi-2 distribution. Assuming no three-way interaction (k independent strata). Ref.: DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/Input: X: data matrix...



Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 10 KB Download (18): Mantel-Haenszel's test Download

Added: June 06, 2013 | Visits: 218

Chi-square tests Chi-square tests of homogeneity and independence.Computes the P-value for I x J - table row/col independence.Ref.: DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/Input:X: data matrix (I x J -table) of the observed frequency cells.method: 'RC': Read-Cressie power divergence...





Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 10 KB Download (18): Chi-square tests Download

Added: May 06, 2013 | Visits: 208

Fisher's Exact with mid-P method It is a non-parametric statistical test for discrete data used todetermine if there are nonrandom associations between the two variables.Mid-P values are a reasonable compromise between the conservativeness ofthe ordinary exact test and the uncertain adequacy of large-sample methods.Mid-P values...


Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 10 KB Download (20): Fisher's Exact with mid-P method Download

Added: August 09, 2013 | Visits: 186

AutoSOME AutoSOME is a new unsupervised multidimensional clustering method for identifying clusters of diverse shapes and sizes from large numerical datasets without prior knowledge of cluster number (BMC Bioinformatics, 11:117). Given the general nature of data clustering, AutoSOME has utility for a wide...


Platforms: Mac

License: Freeware Size: 10.24 KB Download (18): AutoSOME Download

Released: October 16, 2012  |  Added: October 16, 2012 | Visits: 232

apLCMS The package generates a feature table from a batch of LC/MS spectra in .cdf format. Instructions: http://www.sph.emory.edu/apLCMS/ References Bioinformatics. 25(15):1930-36. BMC Bioinformatics. 11:559.


Platforms: Windows, Mac, BSD

License: Freeware Size: 5.17 MB Download (27): apLCMS Download

Released: June 05, 2012  |  Added: June 05, 2012 | Visits: 294

CNV Workshop CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 1.02 MB Download (27): CNV Workshop Download

Released: September 26, 2012  |  Added: September 26, 2012 | Visits: 228

FASeg An R package that performs forward-backward fragment assembling segmentation. Reference: BMC Bioinformatics. 2007 May 3;8:145.


Platforms: Windows, Mac, Linux

License: Freeware Size: 13.46 MB Download (27): FASeg Download

Released: July 09, 2012  |  Added: July 09, 2012 | Visits: 245

JCVI Primer Designer This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. 'Novel computational methods for increasing PCR primer design effectiveness in directed sequencing'. BMC Bioinformatics 2008, 9:191.


Platforms: Windows, Mac, Linux

License: Freeware Size: 181.36 MB Download (30): JCVI Primer Designer Download

Released: December 07, 2012  |  Added: December 07, 2012 | Visits: 188

PheMaDB (Phenotype Microarray DataBase) PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.


Platforms: Mac

License: Freeware Size: 44.67 MB Download (27): PheMaDB (Phenotype Microarray DataBase) Download

Added: June 08, 2013 | Visits: 203

Cumulative Mann-Kendall trend test A cumulative Mann-Kendall trend test.Calculating p-values for monotonic trend of ordinal data sequences(e.g. proteins) by a compound test based on Kendall's rank correlation.Ref.: The DeltaProt toolbox at http://services.cbu.uib.no/software/deltaprot/Use: pval = cumKendallTest(Q,pop,tail)returns...


Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 10 KB Download (19): Cumulative Mann-Kendall trend test Download

Added: July 10, 2013 | Visits: 162

GTOM - Generalized Topological Overlaping Measure COMPUTEGTOM computes the generalized overlaping measure algorithm (GTOM) [1]AuthorsJoaquin GodoT-i &IdoT-igo Martincorena University of Navarra -Dpt. of Physics and Applied Mathematics &Centre for Applied Medical Research. Pamplona (Spain). November 22nd, 2007batchComputeGTOM.m contains an...


Platforms: Matlab

License: Shareware Cost: $0.00 USD Size: 10 KB Download (18): GTOM - Generalized Topological Overlaping Measure Download

Added: July 09, 2013 | Visits: 200

ErmineJ ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...


Platforms: Mac

License: Freeware Size: 21.13 MB Download (16): ErmineJ Download

Added: November 03, 2006 | Visits: 3.143

The Journal The Journal for you! * Keep a daily journal! Keeping a daily journal has never been easier! The Journal always knows what day it is, and automatically brings up a new entry for you every day. * Get organized! With The Journal you can be as organized as you want to be! Keep your "daily pages"...


Platforms: Windows

License: Shareware Cost: $39.95 USD Size: 3.13 MB Download (353): The Journal Download

Released: July 08, 2001  |  Added: June 26, 2006 | Visits: 3.161

Paraben's Daily Journal Keep a journal for business or personal use. Standard word processing interface including spellcheck & thesaurus. Encrypted files allow you to password protect your entries Supports multiple users. Browse entries with the navigation bar. Use a powerful search engine to search by date, keyword,...


Platforms: Windows

License: Shareware Cost: $24.95 USD Size: 1.53 MB Download (139): Paraben's Daily Journal Download

Released: June 11, 2001  |  Added: September 01, 2006 | Visits: 3.172

Glucose Journal and Database A database program for people with diabetes who test their blood sugar. Record, analyze, and organize glucose test results. Keep an organized computer journal or diary of important blood sugar test records. Glucose test results are always perfectly ordered by date and time. A Master Journal...


Platforms: Windows

License: Shareware Cost: $23.95 USD Size: 3.71 MB Download (149): Glucose Journal and Database Download

Added: May 15, 2006 | Visits: 4.169

All-in-One Journal The All-in-one Journal is a full featured Journal that includes Full Audio Record & Playback. Now you can record your Journal entries in Audio too. Great for personalizing your entries, recording your children or grandchildren, leaving messages, reminders and more. The All-in-One Journal can...


Platforms: Windows

License: Shareware Cost: $24.95 USD Size: 5.73 MB Download (134): All-in-One Journal Download

Added: June 19, 2006 | Visits: 2.358

Forever Journal Co-designed by a Mental Health Professional and an award winning windows developer, Forever Journal is multi-faceted journaling software that is secure and password protected. It also looks like a real paper journal! But, unlike a paper journal which can be found and read, this system protects...


Platforms: Windows

License: Shareware Cost: $29.95 USD Size: 4.72 MB Download (130): Forever Journal Download

Released: February 02, 2004  |  Added: June 24, 2006 | Visits: 2.306

Alpha Journal Alpha Journal lets anyone keep a private journal, diary or log for personal or business use, but that's not all... Entries are stored in an encrypted file with optional password protection and can contain formatted text, pictures, sounds and even other documents. Entries can be added, deleted,...


Platforms: Windows, Windows CE

License: Shareware Cost: $19.95 USD Size: 2.06 MB Download (169): Alpha Journal Download

Released: June 08, 2008  |  Added: June 19, 2008 | Visits: 1.289

Effective-Journal With Effective-Journal you can create some wonderful and colorful entries. Insert pictures and emoticons to liven up your journal. We have made a variety of emoticons as well. In Journal you can format your text with the same controls as in Microsoft's WordPad. The Text is Rich Text based, which...


Platforms: Windows

License: Shareware Cost: $15.95 USD Size: 2.74 MB Download (111): Effective-Journal Download

Released: June 23, 2008  |  Added: July 05, 2008 | Visits: 2.141

Xtreme Journal System Keep a secure, future safe journal how you want it. Keep it safe by optionally password protecting it or archive and store it anywhere for safety. Auto backup options make keeping a journal safer than ever! Search and navigate through your journal easily. You can easily enter text, images,...


Platforms: Windows

License: Shareware Cost: $29.95 USD Size: 11.47 MB Download (113): Xtreme Journal System Download

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